99-2538. The United States Rice Genome Sequencing Project; Interagency Program Announcement; Request for Proposals and Request for Input  

  • [Federal Register Volume 64, Number 22 (Wednesday, February 3, 1999)]
    [Notices]
    [Pages 5562-5568]
    From the Federal Register Online via the Government Publishing Office [www.gpo.gov]
    [FR Doc No: 99-2538]
    
    
    
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    _______________________________________________________________________
    
    Part V
    
    Department of Agriculture
    Cooperative State Research, Education, and Extension Service
    
    National Science Foundation
    
    Department of Energy
    Office of the Secretary
    _______________________________________________________________________
    
    
    
    Rice Genome Sequencing Project; Interagency Program Announcement; 
    Request for Proposals and Request for Input; Notice
    
    Federal Register / Vol. 64, No. 22 / Wednesday, February 3, 1999 / 
    Notices
    
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    DEPARTMENT OF AGRICULTURE
    
    Cooperative State Research, Education, and Extension Service
    
    NATIONAL SCIENCE FOUNDATION
    
    DEPARTMENT OF ENERGY
    
    Office of the Secretary
    
    
    The United States Rice Genome Sequencing Project; Interagency 
    Program Announcement; Request for Proposals and Request for Input
    
    AGENCIES: U.S. Department of Agriculture, National Science Foundation 
    and U.S. Department of Energy.
    
    ACTION: Notice of request for proposals and request for input.
    
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    SUMMARY: As a collaborative, interagency effort, the Cooperative State 
    Research, Education, and Extension Service (CSREES) of the Department 
    of Agriculture, the National Science Foundation, and the Department of 
    Energy are soliciting proposals for the United States Rice Genome 
    Sequencing Projects. Proposals are hereby requested from eligible 
    institutions as identified herein for competitive consideration of 
    awards. By this notice, the CSREES additionally solicits stakeholder 
    input from any interested party regarding the FY 1999 request for 
    proposals for use in the development of the next request for proposals 
    for The United States Rice Genome Sequencing Project.
    
    DATES: Proposals are due May 4, 1999. Comments regarding this request 
    for proposals are requested within six months from the issuance of this 
    notice. Comments received after that date will be considered to the 
    extent practicable.
    
    FOR FURTHER INFORMATION CONTACT:
        Dr. Ed Kaleikau; Plant Genome Program; NRI Competitive Grants 
    Program; Cooperative State Research, Education, and Extension Service; 
    U.S. Department of Agriculture; STOP 2241; 1400 Independence Avenue, 
    S.W.; Washington, D.C. 20250-2241; Telephone: 202-401-1901; Fax: 202-
    401-6488; E-mail: ekaleikau@reeusda.gov; or Dr. David Meinke; Plant 
    Genome Research Program; Division of Biological Infrastructure; 
    National Science Foundation; 4201 Wilson Blvd; Arlington, VA 22230; 
    Telephone: 703-306-1470; Fax: 703-306-0339; E-mail: dmeinke@nsf.gov; or 
    Gregory L. Dilworth; Division of Energy Biosciences, ER-17; U.S. 
    Department of Energy; 19901 Germantown Road; Germantown, MD 20874; 
    Telephone: 301-903-2873; Fax: 301-903-1003; E-mail: 
    Greg.dilworth@oer.doe.gov.
        Written comments should be submitted by first-class mail to: Office 
    of Extramural Programs; Competitive Research Grants and Awards 
    Management; USDA-CSREES; STOP 2299; 1400 Independence Avenue, S.W.; 
    Washington, D.C. 20250-2299, or via e-mail to: [email protected] In 
    your comments, please include the name of the program and the fiscal 
    year request for proposals to which you are responding.
    
    SUPPLEMENTARY INFORMATION:
    
    Table of Contents
    
    Purpose
    Background
    Introduction
    Authority
    Applicant Eligibility
    Principal Investigator and Other Senior Staff
    Award Information and Available Funding
    How to Obtain Application Materials
    Proposal Format
    Proposal Submission
        What to Submit
        When and Where to Submit Proposals
    Proposal Evaluation
    Award Administration
        Awards
        Use of Funds; Changes
    Applicable Regulations
    Additional Information
        Confidential Aspects of Proposals and Awards
        Stakeholder Input
    
    Purpose
    
        The purpose of this interagency program announcement is to solicit 
    proposals to initiate systematic sequencing of the genome of rice in 
    the United States as part of an international effort that includes the 
    Rice Genome Program of Japan. The ultimate goal of this project is to 
    sequence the entire rice genome as a model monocot (grass) species. The 
    target date for completion is before the year 2008. Initially, it is 
    anticipated that up to three 3-year awards will be made through this 
    program in fiscal year (FY) 1999 contingent upon the quality of 
    proposals received and the availability of funds.
    
    Background
    
        The National Science and Technology Council (NSTC), in response to 
    a request of Congress, established an Interagency Working Group on 
    Plant Genomes (IWGPG) in May 1997. The IWGPG consisted of 
    representatives from the Department of Agriculture (USDA), National 
    Science Foundation (NSF), Department of Energy (DOE), National 
    Institutes of Health (NIH), the Office of Science and Technology Policy 
    (OSTP) and the Office of Management and Budget (OMB). The IWGPG was 
    created to identify science-based priorities for a national plant 
    genome initiative and to plan for a collaborative interagency approach 
    to address these priorities. In January 1998, the IWGPG provided a 
    report describing a five-year plan and rationale for a National Plant 
    Genome Initiative. One of the Initiative's goals is to participate in 
    an international effort to sequence the rice genome in collaboration 
    with the Rice Genome Program of Japan, other countries and the private 
    sector where appropriate. It is expected that through these efforts the 
    resulting information, data, software, germplasm, and other research 
    tools and biological materials can be made readily and openly available 
    to the scientific community at large.
        Grasses are one of the most diverse groups of plants and include 
    the world's major food crops such as rice, corn, wheat, rye, barley, 
    sorghum, sugarcane, and millet. While the genome size among grass 
    species varies greatly, they share common sets of genes. There has been 
    a strong interest among many plant biologists to sequence the rice 
    genome, as a representative monocot to complement and extend advances 
    made with the Arabidopsis thaliana (dicot) genome project. The rapid 
    advances in sequencing technologies have now made it a feasible 
    undertaking given the relatively small size of the rice genome 
    ( 430 million base pairs).
        Scientists interested in the genome sequencing of rice participated 
    in a workshop held in September 1997. An ad hoc international working 
    group, nominated in Singapore, met in February 1998 in Tsukuba, Japan 
    to develop a long-range plan for the International Rice Genome 
    Sequencing Project. A follow up Workshop on Rice Genome Sequencing was 
    held, with the support of USDA, NSF, and DOE, in Washington, D.C., 
    April 1998, to address the U.S. response to this initiative. This 
    program announcement is an outcome of that workshop.
    
    Introduction
    
        Recognizing the potential of a rice genome sequencing effort to 
    contribute to their mission, NSF and DOE have joined with USDA to 
    initiate a U.S. Rice Genome Sequencing Project. This project will be 
    coordinated with other ongoing U.S. genome projects including the human 
    genome research project supported by NIH and DOE, the microbial genome 
    project supported by DOE, the NSF Plant Genome Research Program, and 
    the USDA Plant Genome Program in order to minimize duplication of 
    effort and to maximize efficient use of available resources. It is 
    intended that the U.S. efforts to
    
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    complete the sequence of rice will be coordinated on an international 
    level with other national and transnational programs.
        As a member of the Gramineae and a crop plant, a wealth of 
    fundamental information about important aspects of plant biology, 
    including economically important characteristics, can be learned from 
    the genome sequence of rice. Because it shares collinear genomes, rice 
    is a key to knowledge of the genome organization of the other grasses. 
    Comparison of the sequence of the dicot, Arabidopsis thaliana, with 
    that of rice, a model monocot, will reveal what genome structures these 
    two different groups of angiosperms have in common and how they differ.
        While the goals of the International Rice Genome Project must be 
    focused, the information provided by the International Project can be 
    exploited by the entire research community to learn: the functions and 
    relative map locations of all cereal genes; the use of map-based 
    sequence information to identify and provide markers for agronomically 
    significant genes; the molecular basis of plant growth and development 
    so that fundamental questions in plant p hysiology, biochemistry, cell 
    biology, and pathology can be addressed and; the relationship of genome 
    structure to gene expression.
    
    Authority
    
        The authority for the USDA participation in this program is found 
    in 7 U.S.C. 450i(b). The authority for NSF participation in this 
    program is found in the National Science Foundation Act of 1950, as 
    amended, 42 U.S.C. 1861, et seq. The authority for DOE participation in 
    this program is found in the Atomic Energy Act of 1954, as amended, 
    Sec. 31, Pub. L. 83-703, 68 Stat. 919, (42 U.S.C. 2051); Energy 
    Reorganization Act of 1974, Title I, Sec. 107, Pub. L. 93-438, 88 Stat. 
    1240, (42 U.S.C. 5817); Federal Nonnuclear Energy Research and 
    Development Act of 1974, Pub. L. 93-577; Department of Energy 
    Organization Act of 1977, as amended, Pub. L. 95-91, (U.S.C. 7101).
    
    Applicant Eligibility
    
        Proposals are solicited from a broad community of scientists at 
    U.S. institutions, including any State agricultural experiment station, 
    college, university, other research institution or organization, 
    Federal agency, national laboratory, private organization, corporation, 
    or individual. Consortia of eligible individuals or organizations may 
    apply, but a single organization or individual must accept overall 
    management responsibility. Involvement of international collaborators 
    is encouraged, although primary support for foreign participants/
    activities must be secured through their own national programs.
    
    Principal Investigator and Other Senior Staff
    
        The Principal Investigator (PI) and other senior staff responsible 
    for the project are expected to have expertise and experience in large-
    scale, high-through-put genomic DNA sequencing. If the application is 
    submitted by a consortium of several groups from one or more 
    institutions, the consortium must make a convincing case that it can 
    function in an effective, efficient, timely and cost-conscious manner.
    
    Award Information and Available Funding
    
        The participating agencies currently have a total of approximately 
    $4 million available for this Program in FY 1999. Subject to the 
    availability of funds, the participating agencies anticipate that an 
    additional $4 million in funding will be available for this program in 
    each FY 2000 and FY 2001, for an anticipated total level of support for 
    this Program of $12 million over three years. The program anticipates 
    initially supporting up to three 3-year awards. These awards will be 
    made in the form of grants and cooperative agreements which will be 
    determined at the time of the award. The exact amount of the award will 
    depend on the advice of reviewers and on the availability of funds. 
    Each participating agency will obligate funds separately. However, a 
    proposal may be funded by one or more of the participating agencies.
    
    How To Obtain Application Materials
    
        All participating agencies have agreed to use the USDA guidelines 
    for proposal format (see below) and application kit. Other material may 
    be required at the time of funding to facilitate the implementation of 
    the award. The guidelines and application kit are available on the USDA 
    web site at the URL: http://www.reeusda.gov/crgam/nri/howto/applkit/
    applkitdoc.htm.
        Paper copies of these application materials may be obtained by 
    sending an e-mail with your name, complete mailing address (not e-mail 
    address), phone number, and materials that you are requesting to 
    psb@reeusda.gov. Materials will be mailed to you (not e-mailed) as 
    quickly as possible. Alternatively, paper copies may be obtained by 
    writing or calling the Proposal Services Unit, Office of Extramural 
    Programs; Cooperative State Research, Education, and Extension Service; 
    U.S. Department of Agriculture; STOP 2245; 1400 Independence Ave., 
    S.W.; Washington, D.C. 20250-2245. Telephone: (202) 401-5048.
    
    Proposal Format
    
        The proposals should be prepared following the guidelines and the 
    instructions below.
        Each proposal must contain the following elements in the order 
    indicated:
        1. Application For Funding Cover Page (Form CSREES-661). All 
    proposals must contain an Application for Funding (Form CSREES-661), 
    which must be signed by the proposed principal investigator(s) and by 
    the cognizant Authorized Organizational Representative who possesses 
    the necessary authority to commit the applicant's time and other 
    relevant resources. Principal investigators who do not sign the 
    proposal cover sheet will not be listed on the award document in the 
    event an award is made. The title of the proposal must be brief (80-
    character maximum), yet represent the major emphasis of the project. 
    Because this title will be used to provide information to those who may 
    not be familiar with the proposed project, highly technical words or 
    phraseology should be avoided where possible. In addition, phrases such 
    as ``investigation of'' or ``research on'' should not be used.
        2. Table of Contents. For ease in locating information, each 
    proposal must contain a detailed table of contents just after the 
    proposal cover page. The Table of Contents should include page numbers 
    for each component of the proposal. Pagination should begin immediately 
    following the Project Summary (see next section).
        3. Project Summary (Form CSREES-1232). The proposal must contain a 
    Project Summary form (Form CSREES-1232). This form must be assembled as 
    the third page of the proposal (immediately after the Table of 
    Contents) and should not be numbered. The names and institutions of all 
    principal and co-investigators should be listed on this form (if space 
    is insufficient, please enter ``see attached'' in this space and 
    provide this information on a separate sheet immediately following the 
    Project Summary form in the proposal). The project summary itself MUST 
    fit within the space indicated (approximately 250 words). The summary 
    is not intended for the general reader; consequently, it may contain 
    technical language comprehendible by persons in disciplines relating to 
    the food and agricultural sciences. The project summary should be a 
    self-contained,
    
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    specific description of the activity to be undertaken and should focus 
    on: Overall project goal(s) and supporting objectives; plans to 
    accomplish project goal(s); and relevance of the project to the 
    systematic sequencing of the genome of rice in the United States.
        4. Project Description. A description of the project must not 
    exceed 20 pages inclusive of tables, diagrams and other visual 
    material. The project description should be numbered and single-spaced 
    with text on one side of the page using a 12 point (10 cpi) type font 
    size and one-inch margins. The following points must be addressed in 
    this section.
        A. Sequencing Strategies--The proposal should include descriptions 
    of: 1. DNA substrates to be sequenced: Include source of the DNA 
    (clones), map of the chromosomal region involved, rationale for 
    choosing the region, method of substrate preparation and all other 
    pertinent information. The strategies proposed must be scalable and 
    applicable to efforts to sequence the entire rice genome.
        2. Sequence quality and quantity: This section should include the 
    level of accuracy to be sought and how that will be measured, the 
    number of bases to be sequenced per unit time, and a discussion of the 
    finishing process and how that will be defined. Plans to fill sequence 
    gaps and coordinate sequencing efforts within the rice community must 
    be discussed in detail.
        3. Genome sequencing technologies and strategies: Technologies/
    strategies that will be used should be described as well as plans for 
    incorporating new developments and/or improvements in sequencing 
    protocols, strategies and technologies as they become available.
        4. Costs of production sequencing in relation to the product 
    proposed: The cost-effectiveness of the sequences generated will be a 
    very important issue. An estimate of the dollars required to produce a 
    specific number of bases (which should include the costs of generating 
    clones, assembly and annotation) should be given. If investigators are 
    proposing a strategy that will yield less than the complete genome 
    sequence, they must provide an overall vision of how this strategy will 
    contribute to the cost-effective completion of the entire rice genome.
        B. Project Management--The proposal should include descriptions of: 
    1. Plans for establishing coordination with the Rice Genome Program of 
    Japan and other existing or planned rice sequencing projects, both 
    nationally and internationally.
        2. Plans for establishing a close linkage to the plant biology 
    research community at large in order to ensure a close collaboration 
    between the sequencing project and the ultimate user community of the 
    sequence information.
        3. Ways to assess progress of the project, including establishing 
    milestones and measuring progress toward them. A common advisory 
    committee will be appointed based upon suggestions from all of the 
    participants, including the agencies, which will serve as a means of 
    advising all participants of problems or solutions which will benefit 
    all of the participants. Describe how such an advisory committee can be 
    incorporated into the management strategies of the proposed project.
        4. Available facilities and equipment including a statement of 
    institutional commitment for the successful completion of the project.
        C. Information Management--The proposal should include: 1. Data 
    management plan should address both internal and external data 
    management issues, including: (1) Mechanisms to assess validity and 
    accuracy of data obtained which will augment or complement procedures 
    to monitor accuracy which may be mandated by the agencies; (2) 
    mechanisms for annotation of data and release of both raw and finished 
    data into public databases--creative, cost-effective strategies for 
    annotating sequences are encouraged; and (3) community access to data 
    mechanisms of data distribution and interactions with other community 
    databases.
        2. Data release policies including how rapidly sequence data will 
    be publicly released after production. The sponsoring agencies require 
    the rapid release of sequence data as described in the most recent 
    International Strategy Meeting on Human Genome Sequencing held in 1997 
    in Bermuda. The National Human Genome Research Institute has set forth 
    these principles on the NIH web site at the following URL: http://
    www.nhgri.nih.gov/Grant__info/Funding/Statements/RFA/data__release.html
        3. A statement signed by an authorized institutional official 
    should be included which clearly describes the institutional policy for 
    sharing information materials resulting from this work with other 
    researchers of the community of scientists.
        5. References to Project Description. All references cited should 
    be complete, including titles and co-authors, and should conform to an 
    accepted journal format.
        6. Facilities and Equipment. All facilities and major items of 
    equipment that are available for use or assignment to the proposed 
    research project during the requested period of support should be 
    described. In addition, items of nonexpendable equipment necessary to 
    conduct and successfully complete the proposed project and for which 
    support is requested under this program should be listed in the budget 
    narrative with the amount and justification for each item.
        7. Collaborative Arrangements. If the nature of the proposed 
    project requires collaboration or subcontractual arrangements with 
    other research scientists, corporations, organizations, agencies, or 
    entities, the applicant must identify the collaborator(s) and provide a 
    full explanation of the nature of the collaboration. Funding 
    contributions by collaborators that will be used to accomplish the 
    stated objectives should be identified. Evidence (i.e., letters of 
    intent) should be provided to assure peer reviewers that the 
    collaborators involved have agreed to render this service. Note, 
    however, that the contributions of collaborators will not be a direct 
    factor in the awarding of any award. In addition, the proposal must 
    indicate whether or not such a collaborative arrangement(s) has the 
    potential for conflict(s) of interest.
        8. Vitae and Publication List(s). (A) Curriculum vitae. The 
    curriculum vitae should be limited to a presentation of academic and 
    research credentials, or commodity production knowledge or experience 
    with that commodity (e.g., educational, employment and professional 
    history, and honors and awards). Unless pertinent to the project, to 
    personal status, or to the status of the organization, meetings 
    attended, seminars given, or personal data such as birth date, marital 
    status, or community activities should not be included. Each vitae 
    shall be no more than two pages in length, excluding the publication 
    lists; and
        (B) Publication List(s). A chronological list of all publications 
    in refereed journals during the past four years, including those in 
    press, must be provided for each professional project member for whom a 
    curriculum vitae is provided. Authors should be listed in the same 
    order as they appear on each paper cited, along with the title and 
    complete reference as these items usually appear in journals.
        9. Conflict of Interest List (Form CSREES-1233). A separate 
    Conflict of Interest List Form (Form CSREES-1233) must be submitted for 
    each investigator for whom a curriculum vitae is required (see above). 
    This form is necessary to assist program staff in excluding from 
    proposal review those individuals who have conflicts of interest with 
    the project personnel in the proposal.
    
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    CSREES must be informed of additional conflicts of interest that arise 
    after the proposal has been submitted. Instructions below are 
    reiterated on Form CSREES-1233.
        For each investigator (and other personnel as described in the 
    program description), list ALPHABETICALLY the full names of only the 
    individuals for each category. Other investigators working in the 
    applicant's specific research area are deemed not to be a conflict of 
    interest for the applicant unless those investigators fall within one 
    of the categories listed below. Additional pages may be used as 
    necessary. A conflict of interest list must be submitted before a 
    proposal is considered complete. Inclusion of a curriculum vitae or 
    publication list in lieu of Form CSREES-1233 is not sufficient.
         All collaborators on research projects within the past 
    four years, including current and planned collaborations;
         All co-authors on publications within the past four years, 
    including pending publications and submissions;
         All persons in your field with whom you have had a 
    consulting, financial arrangement, or other arrangement that might give 
    rise to a conflict of interest within the past four years; and
         All thesis or postdoctoral advisees/advisors within the 
    past four years.
        10. Budget (Form CSREES-55). A detailed budget is required for each 
    year of requested support. In addition, a summary budget is required 
    detailing requested support for the overall project period. A copy of 
    the form which must be used for this purpose (Form CSREES-55), along 
    with instructions for completion, is included in the Application Kit 
    and may be reproduced as needed by applicants. Funds may be requested 
    under any of the categories listed, provided that the item or service 
    for which support is requested may be identified as necessary for 
    successful conduct of the proposed project, is allowable under 
    applicable Federal cost principles, and is not prohibited under any 
    applicable Federal statute.
        11. Budget Narrative. A budget narrative should be included which 
    discusses how the budget specifically supports the proposed project 
    activities. It should explain how each budget item (such as salaries 
    and wages for professional and technical staff, student workers, 
    travel, equipment, etc.) is essential to achieving project objectives. 
    Funds may be requested under any of the categories listed on the budget 
    form, provided that the item or service for which support is sought is 
    allowable under the enabling legislation and the applicable Federal 
    cost principles.
        The following guidelines should be used in developing your proposal 
    budget(s):
        1. Salaries and Wages. Salaries and wages are allowable charges and 
    may be requested for personnel who will be working on the project in 
    proportion to the time such personnel will devote to the project. If 
    salary funds are requested, the number of Senior and Other Personnel 
    and the number of Funded Work Months must be shown in the spaces 
    provided. Award funds may not be used to augment the total salary or 
    rate of salary of project personnel or to reimburse them for time in 
    addition to a regular full-time salary covering the same general period 
    of employment. Salary funds requested must be consistent with the 
    normal policies of the institution. Administrative and Clerical 
    salaries are normally classified as indirect costs. (See Item 9. 
    below.) However, if requested under A.2.e., they must be fully 
    justified.
        2. Fringe Benefits. Funds may be requested for fringe benefit costs 
    if the usual accounting practices of your institution provide that 
    institutional contributions to employee benefits (social security, 
    retirement, etc.) be treated as direct costs. Fringe benefit costs may 
    be included only for those personnel whose salaries are charged as a 
    direct cost to the project.
        3. Nonexpendable Equipment. Nonexpendable equipment means tangible 
    nonexpendable personal property including exempt property charged 
    directly to the award having a useful life of more than one year and an 
    acquisition cost of $5,000 or more per unit. Items of necessary 
    instrumentation or other nonexpendable equipment should be listed 
    individually by description and estimated cost. This applies to revised 
    budgets, as the equipment item(s) and amount(s) may change. NOTE: If 
    the organization has established a lower threshold, amounts less than 
    $5,000 may be included in this category.
        No funds will be awarded for the purchase or installation of fixed 
    equipment. In the case of any equipment or product that may be 
    authorized to be purchased with funds provided under this program, 
    entities receiving such funds are encouraged to use such funds to 
    purchase only American-made equipment or products.
        4. Materials and Supplies. The types of expendable materials and 
    supplies which are required to carry out the project should be 
    indicated in general terms with estimated costs.
        5. Travel. The type and extent of travel and its relationship to 
    project objectives should be described briefly and justified. Provide 
    the purpose of the trip, destination, mode of transportation, number of 
    people, number of days, and cost per trip. Airfare allowances normally 
    should not exceed round-trip jet economy air accommodations. U.S. flag 
    carriers must be used when available. See 7 CFR Part 3015.205(b)(4) for 
    further guidance.
        6. Publication Costs/Page Charges. Anticipated costs of preparing 
    and publishing results of the research being proposed (including page 
    charges, necessary illustrations, and the cost of a reasonable number 
    of coverless reprints) may be estimated and charged against the award.
        7. Computer (ADPE) Costs. Reimbursement for the costs of using 
    specialized facilities (such as a university-or department-controlled 
    computer mainframe or data processing center) may be requested if such 
    services are required for completion of the work.
        8. All Other Direct Costs. Anticipated direct project charges not 
    included in other budget categories must be itemized with estimated 
    costs and justified on a separate sheet of paper attached to Form 
    CSREES-55. This applies to revised budgets, as the item(s) and dollar 
    amount(s) may change. Examples may include space rental at remote 
    locations, subcontractual costs, charges for consulting services, and 
    fees for necessary laboratory analyses. You are encouraged to consult 
    the ``Instructions for Completing Form CSREES-55, Budget,'' of the 
    Application Kit for detailed guidance relating to this budget category.
        9. Indirect Costs. When submitting a proposal, institutions should 
    use their current Federal negotiated rate for indirect costs. Please 
    note that indirect costs for proposals funded by USDA will be capped at 
    14% of total Federal funds provided under that award. Congress, in 
    section 711 of the Agriculture, Rural Development, Food and Drug 
    Administration, and Related Agencies Appropriations Act for FY 1999, 
    Sec. 101(a) of Pub. L. No. 105-277, prohibits CSREES from using the 
    funds available for this Program for FY 1999 to pay indirect costs 
    exceeding 14 percent of the total Federal funds provided under each 
    award on competitively awarded research grants.
    
        (Note: The FY 1999 Appropriations Act supercedes the limitation 
    on indirect costs of 19 percent of the total Federal funds provided 
    for competitively-awarded research grants in Section 230(a) of the 
    Agricultural Research, Extension, and Education Reform
    
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    Act of 1998 (7 U.S.C. 3310). Therefore, awards made by CSREES are 
    limited to this 14 percent indirect costs limitation. This 
    limitation also applies to the recovery of indirect costs by any 
    subawardee or subcontractor, and should be reflected in the 
    subrecipient budget.)
    
        To accommodate the differences in allowable indirect costs between 
    USDA, NSF and DOE, the applicant may be required at the time of award 
    to submit a separate budget with indirect cost rates appropriate to 
    each agency.
        10. Cost-sharing. Cost-sharing is encouraged; however, cost-sharing 
    is not required nor will it be a direct factor in the awarding of any 
    award.
        12. Current and Pending Support (Form CSREES-663). All proposals 
    must contain Form CSREES-663 listing this proposal and any other 
    current public or private research support (including in-house support) 
    to which key personnel identified in the proposal have committed 
    portions of their time, whether or not salary support for the person(s) 
    involved is included in the budget. Analogous information must be 
    provided for any pending proposals that are being considered by, or 
    that will be submitted in the near future to other possible sponsors, 
    including other USDA programs or agencies. Concurrent submission of 
    identical or similar proposals to other possible sponsors will not 
    prejudice proposal review or evaluation by the participating agency for 
    this purpose. However, a proposal that duplicates or overlaps 
    substantially with a proposal already reviewed and funded (or that will 
    be funded) by another organization or agency will not be funded under 
    this program.
        13. Assurance Statements (Form CSREES-662) (Research Involving 
    Special Considerations). If it is anticipated that the research project 
    will involve recombinant DNA or RNA research, experimental vertebrate 
    animals, or human subjects, an Assurance Statement, Form CSREES-662, 
    must be completed and included in the proposal. Please note that funds 
    will not be released until the awarding agency receives and approves 
    documentation indicating approval by the appropriate institutional 
    committee(s) regarding DNA or RNA research, animal care, or the 
    protection of human subjects, as applicable.
        14. Certifications Regarding Debarment and Suspension, Drug-Free 
    Work Place, and Lobbying. By signing the Application For Funding cover 
    page (Form CSREES-661), applicants are providing the required 
    certifications set forth in 7 CFR Part 3017, as amended, regarding 
    Debarment and Suspension and Drug-Free Workplace; and 7 CFR Part 3018 
    regarding Lobbying. Submission of the individual forms found in the 
    application kit is not required (Forms AD-1047, -1049, -1050, and the 
    Certification Regarding Lobbying). For additional information, refer to 
    the certification at the bottom of Form CSREES-661.
        Form AD-1048 must be completed by a subcontractor or consultant and 
    retained by the awardee.
        Questions specifically related to the completion of the above 
    certifications should be directed to the CSREES Office of Extramural 
    Programs, Grants Management Branch at (202) 401-5050.
        15. National Environmental Policy Act Exclusions Form (Form CSREES-
    1234). As outlined in 7 CFR Part 3407 (CSREES's implementation of the 
    National Environmental Policy Act of 1969 (NEPA), as amended (42 U.S.C. 
    4321 et seq.)), the environmental data or documentation for any 
    proposed project is to be provided to CSREES in order to assist CSREES 
    in carrying out its responsibilities under NEPA. In some cases, 
    however, the preparation of environmental data or documentation may not 
    be required. Certain categories of actions are excluded from the 
    requirements of NEPA. The USDA and CSREES exclusions are listed in 7 
    CFR 1b.3 and 7 CFR 3407.6, respectively.
        In order for CSREES to determine whether any further action is 
    needed with respect to NEPA (e.g., preparation of an environmental 
    assessment (EA) or environmental impact statement (EIS)), pertinent 
    information regarding the possible environmental impacts of a proposed 
    project is necessary; therefore, the National Environmental Policy Act 
    Exclusions Form (Form CSREES-1234) provided in the Application Kit must 
    be included in the proposal indicating whether the applicant is of the 
    opinion that the project falls within one or more of the categorical 
    exclusions. Form CSREES-1234 should follow Form CSREES-661, Application 
    for Funding, in the proposal.
        Even though a project may fall within the categorical exclusions, 
    CSREES may determine that an EA or an EIS is necessary for an activity 
    if substantial controversy on environmental grounds exists or if other 
    extraordinary conditions or circumstances are present that may cause 
    such activity to have a significant environmental effect.
        16. Additions to Project Description. The participating agencies 
    expect each project description to be complete while meeting the page 
    limit established in this section (Proposal Format). However, if the 
    inclusion of additional information is necessary to ensure the 
    equitable evaluation of the proposal (e.g., photographs that do not 
    reproduce well, reprints, and other pertinent materials that are deemed 
    to be unsuitable for inclusion in the text of the proposal), then 14 
    copies of the materials should be submitted. Each set of such materials 
    must be identified with the name of the submitting organization, and 
    the name(s) of the principal investigator(s). Information may not be 
    appended to a proposal to circumvent page limitations prescribed for 
    the project description. Extraneous materials will not be used during 
    the peer review process.
    
    Proposal Submission
    
    What To Submit
    
        An original and 14 copies of a proposal must be submitted. Each 
    copy must be stapled securely in the upper left-hand corner (DO NOT 
    BIND). All copies of the proposal must be submitted in one package.
    
    When and Where To Submit Proposals
    
        Proposals must be received by May 4, 1999. Proposals sent by First 
    Class mail must be sent to the following address: The United States 
    Rice Genome Sequencing Project; c/o Proposal Services Unit; Office of 
    Extramural Programs; Cooperative State Research, Education, and 
    Extension Service; U.S. Department of Agriculture; STOP 2245; 1400 
    Independence Avenue, S.W.; Washington, D.C. 20250-2245; Telephone: 
    (202) 401-5048.
        Proposals that are delivered by express mail, a courier service, or 
    by hand must be submitted to the following address (note that the zip 
    code differs from that shown above): The United States Rice Genome 
    Sequencing Project; c/o Proposal Services Unit; Office of Extramural 
    Programs; Cooperative State Research, Education, and Extension Service; 
    U.S. Department of Agriculture; Room 303, Aerospace Center; 901 D 
    Street, S.W.; Washington, D.C. 20024; Telephone: (202) 401-5048. 
    Facsimile (FAX) copies will not be accepted.
    
    Proposal Evaluation
    
        Selection of awards will be based on merit review by experts using 
    established peer review systems as described in these guidelines. A 
    special emphasis panel will be formed to review the applications and 
    site visits may be used as needed. The following evaluation factors 
    will be used in reviewing applications:
        1. Performance competence: This criterion addresses the technical 
    merit of the proposed approach, the capabilities of the proposed 
    personnel, including those of the Principal
    
    [[Page 5567]]
    
    Investigator and other senior staff as discussed above, the adequacy of 
    the resources available or proposed, and the likelihood that this 
    project will lead to a successful, timely, cost-effective completion of 
    the rice genome sequence.
        2. Project management: This criterion addresses the overall quality 
    of the technical and managerial aspects of the proposal, including 
    plans for the release of the data and the sharing of the information 
    and resources resulting from the project to the scientific community as 
    noted below, and for management oversight and long-range planning.
        3. Effect of the activity on the scientific and agricultural 
    infrastructure: This criterion addresses the potential of the proposed 
    activity to contribute to better understanding or improvement of the 
    quality and effectiveness of the Nation's scientific research, 
    education, and human resources capabilities. An important issue is a 
    likelihood of national impact and widespread, appropriate dissemination 
    and use of results in strengthening the scientific and agricultural 
    infrastructure of this nation.
        4. Scientific collaboration and information sharing: Sequencing of 
    the genome of a model organism is a community activity. As such, a 
    close collaboration among the scientists and organizations involved in 
    sequencing activities and effective dissemination to the users of the 
    information are important components of this criterion.
        5. Scientific merit of the project: This criterion addresses the 
    conceptual adequacy of the sequencing approach including suitability 
    and feasibility of methodology, clarity and delineation of objectives, 
    demonstration of feasibility through preliminary data, novelty, 
    uniqueness and originality.
        6. Appropriateness of the proposed budget.
    
    Award Administration
    
        The U.S. Rice Genome Sequencing Project will be administered and 
    managed as an interagency program involving all participating agencies 
    throughout the entire process from the development of the program 
    announcement to the review and selection. USDA, NSF and DOE will fund 
    awards separately. The amount of each award will be determined jointly 
    by USDA/NSF/DOE representatives after the panel review process has been 
    completed. Other material may be required at the time of funding to 
    facilitate the implementation of the award from participating agencies. 
    Awards will be administered as follows:
    
    Awards
    
        1. General: Within the limit of funds available for such purpose, 
    the awarding official shall make awards to those responsible, eligible 
    applicants whose proposals are judged most meritorious in the announced 
    program area by procedures set forth in this request for proposals. The 
    date specified as the effective date of the award shall be no later 
    than September 30, of the Federal fiscal year in which the project is 
    approved for support and funds are appropriated for such purpose, 
    unless otherwise permitted by law. It should be noted that the project 
    need not be initiated on the award effective date, but as soon 
    thereafter as practicable so that project goals may be attained within 
    the funded project period. All funds awarded under this request for 
    proposals shall be expended solely for the purpose for which the funds 
    are awarded in accordance with the approved application and budget, the 
    terms and conditions of the award, the applicable Federal cost 
    principles, and the applicable participating agency assistance 
    regulations.
        2. Organizational Management Information: Specific management 
    information relating to an applicant shall be submitted on a one-time 
    basis as part of the responsibility determination prior to the award of 
    an award if such information has not been provided previously under 
    this or another program for which the sponsoring agency is responsible. 
    Copies of forms recommended for use in fulfilling the requirements 
    contained in this section will be provided by the awarding agency as 
    part of the pre-award process.
        3. Award Document: The award document shall include at a minimum 
    the following:
        a. Legal name and address of performing organization or institution 
    to whom the funding agency has awarded an award under this program;
        b. Title of Project;
        c. Name(s) and address(es) of principal investigator(s) chosen to 
    direct and control approved activities;
        d. Award identification number assigned by the funding agency;
        e. Project period, specifying the amount of time the funding agency 
    intends to support the project without requiring recompetition for 
    funds;
        f. Total award amount approved by the funding agency during the 
    project period;
        g. Legal authority(ies) under which the award is made;
        h. Approved budget plan for categorizing project funds to 
    accomplish the stated purpose of the award; and
        i. Other information or provisions deemed necessary by the funding 
    agency to carry out its respective awarding activities or to accomplish 
    the purpose of a particular award.
        4. Notice of Award: The notice of award, in the form of a letter, 
    will be prepared and will provide pertinent instructions or information 
    to the awardee that is not included in the award document.
        5. The awarding agency will make awards as either grants or 
    cooperative agreements to carry out this program.
    
    Use of Funds; Changes
    
        Unless otherwise stipulated in the terms and conditions of the 
    award, the following provisions apply:
        1. Delegation of Fiscal Responsibility: The awardee may not in 
    whole or in part delegate or transfer to another person, institution, 
    or organization the responsibility for use or expenditure of funds.
        2. Changes in Project Plans:
        a. The permissible changes by the awardee, principal 
    investigator(s), or other key project personnel in the approved 
    research project award shall be limited to changes in methodology, 
    techniques, or other aspects of the project to expedite achievement of 
    the project's approved goals. If the awardee and/or the principal 
    investigator(s) are uncertain as to whether a change complies with this 
    provision, the question must be referred to the Authorized Departmental 
    Officer (ADO) for a final determination.
        b. Changes in approved goals, or objectives, shall be requested by 
    the awardee and approved in writing by the ADO prior to effecting such 
    changes. In no event shall requests for such changes be approved which 
    are outside the scope of the original approved project.
        c. Changes in approved project leadership or the replacement or 
    reassignment of other key project personnel shall be requested by the 
    awardee and approved in writing by the awarding official prior to 
    effecting such changes.
        d. Transfers of actual performance of the substantive programmatic 
    work in whole or in part and provisions for payment of funds, whether 
    or not Federal funds are involved, shall be requested by the awardee 
    and approved in writing by the ADO prior to effecting such transfers.
        e. Changes in Project Period: The project period may be extended by 
    the awarding agency without additional financial support, for such 
    additional period(s) as the ADO determines may be necessary to complete 
    or fulfill the purposes of an approved project. Any
    
    [[Page 5568]]
    
    extension of time shall be conditioned upon prior request by the 
    awardee and approval in writing by the ADO, unless prescribed otherwise 
    in the terms and conditions of an award.
        f. Changes in Approved Budget: Changes in an approved budget must 
    be requested by the awardee and approved in writing by the ADO prior to 
    instituting such changes if the revision will involve transfers or 
    expenditures of amounts requiring prior approval as set forth in the 
    applicable Federal costs principles, Departmental regulations, or in 
    the award document.
    
    Applicable Regulations
    
        Several other Federal statutes and regulations apply to proposals 
    considered for review and to projects awarded under this program. These 
    include but are not limited to regulations cited in the section 
    entitled REGULATIONS, GUIDELINES, AND LITERATURE in the Catalog of 
    Federal Domestic Assistance (CFDA) for each of the participating 
    agencies. The CFDA numbers are as follows: USDA--10.206; NSF--47.074; 
    DOE--81.049. The OMB number for NSF is OMB No. 3145-0058. The USDA 
    component of this program is subject to the program regulations at 7 
    CFR 3411. Note that CSREES, consistent with those regulations, has 
    provided other terms in this RFP to govern proposal format and 
    evaluation.
    
    Additional Information
    
    Confidential Aspects of Proposals and Awards
    
        When a proposal results in an award, it becomes a part of the 
    record of the Agency's transactions, available to the public upon 
    specific request. Information that the Administrator determines to be 
    of a privileged nature will be held in confidence to the extent 
    permitted by law. Therefore, any information that the applicant wishes 
    to have considered as privileged should be clearly marked as such and 
    sent in a separate statement, two copies of which should accompany the 
    proposal. The original copy of a proposal that does not result in an 
    award will be retained by the Agency for a period of one year. Other 
    copies will be destroyed. Proposals that do not receive an award will 
    be released to others only with the consent of the applicant or to the 
    extent required by law. If such a request is made, the applicant will 
    be consulted prior to release of the proposal. A proposal may be 
    withdrawn at any time prior to the final selection action thereon.
        Potential applicants are strongly encouraged to contact project 
    officers and discuss their plans. Inquiries regarding the announcement 
    can be directed to any one of the agency representatives identified at 
    the beginning of this request for proposals.
    
    Stakeholder Input
    
        CSREES is soliciting comments regarding this request for proposals 
    from any interested party. These comments will be considered in the 
    development of the next request for proposals for the program as 
    needed. Such comments will be forwarded to the Secretary or his 
    designee for use in meeting the requirements of section 103(c)(2) of 
    the Agricultural Research, Extension, and Education Reform Act of 1998 
    (Pub. L. 105-185). This section requires the Secretary of Agriculture 
    to solicit and consider input on a current request for proposals from 
    persons who conduct or use agricultural research, education, or 
    extension for use in formulating the next request for proposals for an 
    agricultural research program funded on a competitive basis.
        In your comments, please include the name of the program and the 
    fiscal year request for proposals to which you are responding. Comments 
    are requested within six months from the issuance of the request for 
    proposals. Comments received after that date will be considered to the 
    extent practicable.
    
        Done at Washington, D.C., on this 27th day of January, 1999.
    Colien Hefferan,
    Acting Administrator, Cooperative State Research, Education, and 
    Extension Service.
    Mary E. Clutter,
    Assistant Director for Biological Sciences, National Science 
    Foundation.
    Patricia Dehmer,
    Associate Director, Office of Sciences, Department of Energy.
    [FR Doc. 99-2538 Filed 2-2-99; 8:45 am]
    BILLING CODE 3410-22-P
    
    
    

Document Information

Published:
02/03/1999
Department:
Energy Department
Entry Type:
Notice
Action:
Notice of request for proposals and request for input.
Document Number:
99-2538
Dates:
Proposals are due May 4, 1999. Comments regarding this request for proposals are requested within six months from the issuance of this notice. Comments received after that date will be considered to the extent practicable.
Pages:
5562-5568 (7 pages)
PDF File:
99-2538.pdf